Index

A

ApproximatePatternCount() (in module GenomeVisualizer.replication)

ApproximatePatternMatching() (in module GenomeVisualizer.replication)

C

Complement() (in module GenomeVisualizer.replication) Consensus() (in module GenomeVisualizer.motifs)

Count() (in module GenomeVisualizer.motifs) CountWithPseudocounts() (in module GenomeVisualizer.motifs)

F

FasterSymbolArray() (in module GenomeVisualizer.replication)

FrequencyMap() (in module GenomeVisualizer.basic) FrequentWords() (in module GenomeVisualizer.basic)

G

GibbsSampler() (in module GenomeVisualizer.motifs)

GreedyMotifSearch() (in module GenomeVisualizer.motifs) GreedyMotifSearchWithPseudocounts() (in module GenomeVisualizer.motifs)

H

HammingDistance() (in module GenomeVisualizer.replication)

L

load_genome_from_txt() (in module GenomeVisualizer.basic)

M

MinimumSkew() (in module GenomeVisualizer.replication)

Motifs() (in module GenomeVisualizer.motifs)

N

Normalize() (in module GenomeVisualizer.motifs)

P

PatternCount() (in module GenomeVisualizer.replication) PatternMatching() (in module GenomeVisualizer.replication) plot_motiflogo() (in module GenomeVisualizer.visualization) plot_skew_array_with_ori() (in module GenomeVisualizer.visualization) plot_symbol_array() (in module GenomeVisualizer.visualization)

Pr() (in module GenomeVisualizer.motifs) Profile() (in module GenomeVisualizer.motifs) ProfileGeneratedString() (in module GenomeVisualizer.motifs) ProfileMostProbableKmer() (in module GenomeVisualizer.motifs) ProfileWithPseudocounts() (in module GenomeVisualizer.motifs)

R

RandomizedMotifSearch() (in module GenomeVisualizer.motifs) RandomMotifs() (in module GenomeVisualizer.motifs)

Reverse() (in module GenomeVisualizer.replication) ReverseComplement() (in module GenomeVisualizer.replication)

S

Score() (in module GenomeVisualizer.motifs)

SkewArray() (in module GenomeVisualizer.replication)

W

WeightedDie() (in module GenomeVisualizer.motifs)